112 lines
4 KiB
Markdown
112 lines
4 KiB
Markdown
# Additional files in the repository
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In order to give you a smooth experience while comprehending this example, all non-notebook files are presented on this page in one place. In reality, these files should be in your project's top-level directory.
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## config.ini
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```ini title="config.ini"
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ENVIRONMENT = DEVELOPMENT
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ENVIRONMENT = ENV:ENVIRONMENT
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MONGO_CONNECTION_STRING=ENV:MONGO_CONNECTION_STRING
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MONGO_DATABASE=highlights
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AWS_REGION_NAME = eu-west-2
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AWS_ACCESS_KEY_ID = MY_DEFAULT_AWS_ACCESS_KEY_ID_FOR_DEVELOPMENT
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AWS_SECRET_ACCESS_KEY = MY_DEFAULT_AWS_SECRET_ACCESS_KEY_FOR_DEVELOPMENT
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LARGE_FILES_BUCKET_NAME = my-orgs-large-files
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AWS_REGION_NAME = ENV:AWS_REGION_NAME
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AWS_ACCESS_KEY_ID = ENV:AWS_ACCESS_KEY_ID
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AWS_SECRET_ACCESS_KEY = ENV:AWS_SECRET_ACCESS_KEY
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LARGE_FILES_BUCKET_NAME = ENV:LARGE_FILES_BUCKET_NAME
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```
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> All necessary configuration which is read by [great_ai.utilities.ConfigFile][]. This will resolve values starting with `ENV:` from your environment variables.
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## requirements.txt
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```requirements.txt title="requirements.txt"
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torch==1.12.0
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transformers==4.20.1
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numpy==1.23.0
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```
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> Usually, it is recommended to pin (freeze) the library versions on which we depend. This file is referenced by the [Dockerfile](#dockerfile).
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## Dockerfile
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```Dockerfile title="Dockerfile"
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# syntax=docker/dockerfile:1
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FROM schmelczera/great-ai:v0.1.6
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COPY --from=ghcr.io/astral-sh/uv:latest /uv /usr/local/bin/uv
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COPY requirements.txt ./
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RUN uv pip install --system --no-cache --requirement requirements.txt
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RUN --mount=type=secret,id=config,target=/run/secrets/config.ini,required=true \
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large-file --backend s3 --secrets /run/secrets/config.ini --cache scibert-highlights
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COPY . ./
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CMD ["deploy.ipynb"]
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```
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> This is used by the CD pipeline to create the production deployment of the service.
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## .dockerignore
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```dockerignore title=".dockerignore"
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.cache
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.git
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data
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.gitignore
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.env
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config.ini
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s3.ini
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mongo.ini
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.vscode
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.dockerignore
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Dockerfile
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.mypy_cache
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.gitignore
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**/__pycache__
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**/.DS_Store
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README.md
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```
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> It is useful not to send, for example, the `.cache` folder used by LargeFile to the docker daemon; this will speed up your local build times substantially.
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!!! Note ".gitignore"
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A very similar looking `.gitignore` file should also be present.
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## Build and run with model caching
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Use [Docker BuildKit secrets](https://docs.docker.com/build/building/secrets/) to make the build configuration available to the model-cache command without copying credentials into the image. The application's `config.ini` above also refers to runtime environment variables such as `MONGO_CONNECTION_STRING`. For the build, prepare a separate `config.ini` outside the project, for example at `/secure/build/config.ini`, containing only these four S3 settings with your actual values:
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```ini title="/secure/build/config.ini"
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AWS_REGION_NAME = eu-west-2
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AWS_ACCESS_KEY_ID = YOUR_BUILD_ACCESS_KEY_ID
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AWS_SECRET_ACCESS_KEY = YOUR_BUILD_SECRET_ACCESS_KEY
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LARGE_FILES_BUCKET_NAME = my-orgs-large-files
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```
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Use concrete values here: the build container does not inherit your shell's environment for resolving `ENV:` entries. After uploading `scibert-highlights` in the training notebook, build from the project's top-level directory:
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```sh
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DOCKER_BUILDKIT=1 docker build --no-cache --progress=plain \
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--secret id=config,src=/secure/build/config.ini --tag scibert-highlights .
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```
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`--no-cache` makes Docker run the model-cache step even if a previous image layer exists. The model stays in the image, while the secret mount is removed after that step. The `.dockerignore` above also prevents the application's `config.ini` from being included by `COPY . ./`.
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At runtime, mount the application's `config.ini` and pass the environment variables it references from your configured shell:
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```sh
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docker run --rm -p 6060:6060 \
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--mount type=bind,source="$(pwd)/config.ini",target=/app/config.ini,readonly \
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--env MONGO_CONNECTION_STRING --env AWS_REGION_NAME \
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--env AWS_ACCESS_KEY_ID --env AWS_SECRET_ACCESS_KEY \
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--env LARGE_FILES_BUCKET_NAME scibert-highlights
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```
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